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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28715142_28730654_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28715142 - 28730654
Intron Length:
15513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
ACTCTTGTAACT
Flanking Amino Acid:
SQKDPKKMQKEYEEKTGRAH
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.8
33.2
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82.1
0.72
0.8
77.8
31
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
50.8
0.1
2
70.72
40.8

Associated Gene:

Gene:
TBC1D14
Ensembl Gene ID:
ENSAPLG00000013358
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013942
28690190 - 28732086
41897