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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28730776_28732039_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
28730776 - 28732039
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTATTTATG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATC
Flanking Amino Acid:
PVFPAALYLVVNLFTRKQSA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.5
0.18
1.2
60.2
44
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
47.5
-0.2
2.5
60.4
44.1
Minor BPS
87
1.14
0.8
89.76
24.1

Associated Gene:

Gene:
TBC1D14
Ensembl Gene ID:
ENSAPLG00000013358
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013942
28690190 - 28732086
41897