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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2873200_2875268_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2873200 - 2875268
Intron Length:
2069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATCATT
5'SS Class:
major
3'SS Sequence:
ACTTCTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCATTTTTGACT
Flanking Amino Acid:
QLNSMQINSYGPGATPSSHT
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
76.4
38.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
74.3
0.55
0.9
72.9
36.8
Minor 5ss
45.5
-0.5
2.9
63.7
41.9
Minor BPS
69.8
0.7
1.2
78.71
38

Associated Gene:

Gene:
SEC24D
Ensembl Gene ID:
ENSAPLG00000002436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002494
2828184 - 2880942
52759