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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2875418_2878765_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2875418 - 2878765
Intron Length:
3348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTTTC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CCTTGCATAACC
Flanking Amino Acid:
GPSAAGQPMHRFQGPPPPNN
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.1
78.3
32.5
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
91.5
0.93
0.6
89.8
18.5
Minor 5ss
44.9
-0.6
2.8
61.1
43.8
Minor BPS
53
0.07
2.1
66.99
44.8

Associated Gene:

Gene:
SEC24D
Ensembl Gene ID:
ENSAPLG00000002436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002494
2828184 - 2880942
52759