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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28784204_28785529_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28784204 - 28785529
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
GTATTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CCTTTTTGTATT
Flanking Amino Acid:
LSPTAKDQVEMYYEAFPPLS
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
73.5
38
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77.6
0.62
1
73.7
41.5
Minor 5ss
51.6
0.06
2.5
70.9
39.7
Minor BPS
47.3
-0.1
1.7
63.05
42.5

Associated Gene:

Gene:
KIAA0232
Ensembl Gene ID:
ENSAPLG00000013499
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027152
28763347 - 28815042
51696
ENSAPLT00000014062
28764175 - 28815042
50868
ENSAPLT00000040644
28628917 - 28815042
186126