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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28873365_28874021_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
28873365 - 28874021
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACCCA
5'SS Class:
major
3'SS Sequence:
TATGCGAAGACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CTATCTTTGACA
Flanking Amino Acid:
QLETYLHIVRADNTQTLTKG
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
56
43.1
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
53.7
0.08
1.2
47.5
43.8
Minor 5ss
36.4
-1.5
3.3
48.8
46.9
Minor BPS
72.7
0.71
1.2
74.73
37

Associated Gene:

Gene:
S100P
Ensembl Gene ID:
ENSAPLG00000013517
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014070
28869907 - 28874058
4152