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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28884558_28885910_R

Intron Information:

Intron Rank:
153547
Intron Class:
major
Intron Phase:
Intron Coordinates:
28884558 - 28885910
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAG
5'SS Class:
strong_major
3'SS Sequence:
AATGTAATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTACCTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
38.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
68.7
0.42
1
60.3
44.1
Minor 5ss
43.2
-0.7
2.9
55
49.2
Minor BPS
79.2
0.91
1.3
85.99
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030087
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032746
28882671 - 28890216
7546