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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28920921_28923517_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28920921 - 28923517
Intron Length:
2597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCC
5'SS Class:
major
3'SS Sequence:
TGTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CTTTCCAAAATG
Flanking Amino Acid:
MDVGWVYTVQESMHAYAANV
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
58.9
37
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
86.3
0.82
0.8
80.8
36.4
Minor 5ss
25.2
-2.9
3.3
33
42.3
Minor BPS
52
-0
2
63.85
44.5

Associated Gene:

Gene:
MAN2B2
Ensembl Gene ID:
ENSAPLG00000005435
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005646
28895050 - 28923634
28585