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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28926799_28927042_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28926799 - 28927042
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATTTCGT
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
ATGCCTTTGACC
Flanking Amino Acid:
MSQKQVGGPPGDNSA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.1
58.1
46.2
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
85.5
0.8
0.7
79.5
26.2
Minor 5ss
41.7
-0.9
2.8
50.5
45.7
Minor BPS
66
0.49
1.2
69.27
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012437
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012970
28926783 - 29110744
183962