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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28927127_28979509_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
28927127 - 28979509
Intron Length:
52383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTACATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCATTTTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.9
0.58
0.9
70.4
34.2
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
60
0.39
1.7
75.56
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012437
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036143
28927043 - 29110744
183702