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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28927127_29058031_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28927127 - 29058031
Intron Length:
130905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
NGAAEFEVSEADIISTVEFN
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
69.8
0.49
1
61
37.5
Major PPT
89.5
0.89
0.6
81.6
30.4
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012437
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012970
28926783 - 29110744
183962