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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29058130_29058701_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29058130 - 29058701
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTC
Flanking Amino Acid:
RVVIFQREPESKNEPYNQGE
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74
36.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.6
0.62
0.8
73.5
31.4
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
65.8
0.48
1.6
73.37
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012437
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021722
28927043 - 29110744
183702
ENSAPLT00000021223
29027036 - 29110744
83709
ENSAPLT00000012970
28926783 - 29110744
183962
ENSAPLT00000036143
28927043 - 29110744
183702
ENSAPLT00000024707
29019347 - 29110744
91398