About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29063036_29064596_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29063036 - 29064596
Intron Length:
1561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCCTCTGATTT
Flanking Amino Acid:
KDLSTVTSLQVPVLKPMDLM
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
82.7
0.74
1
80.6
37
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
49.8
0.06
1.7
69.64
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012437
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024707
29019347 - 29110744
91398
ENSAPLT00000021722
28927043 - 29110744
183702
ENSAPLT00000021223
29027036 - 29110744
83709
ENSAPLT00000012970
28926783 - 29110744
183962
ENSAPLT00000036143
28927043 - 29110744
183702