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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29084089_29098462_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29084089 - 29098462
Intron Length:
14374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTCTTTAAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCTTTAAAC
Flanking Amino Acid:
ASALCDKHSKLYEEPEDPSN
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.4
66.3
45.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80
0.67
0.9
77.7
34.4
Minor 5ss
37.8
-1.4
3
47.3
41.1
Minor BPS
82.1
0.99
1.2
87.66
28.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012437
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024707
29019347 - 29110744
91398
ENSAPLT00000021722
28927043 - 29110744
183702
ENSAPLT00000012970
28926783 - 29110744
183962
ENSAPLT00000036143
28927043 - 29110744
183702