About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29095403_29098462_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29095403 - 29098462
Intron Length:
3060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTTCA
5'SS Class:
major
3'SS Sequence:
TTTCTTTAAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCTTTAAAC
Flanking Amino Acid:
FVSSSVGSWTVYEEPEDPSN
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
68.6
39.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80
0.67
0.9
77.7
34.4
Minor 5ss
44.6
-0.6
2.9
59.3
45.3
Minor BPS
82.1
0.99
1.2
87.66
28.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012437
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021223
29027036 - 29110744
83709