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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29128043_29129731_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29128043 - 29129731
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGCTCATAAATA
Flanking Amino Acid:
TPEELPLRLKVVKYPLHAIM
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
62
0.3
1
62.3
30.4
Major PPT
88
0.86
0.7
80.3
31.7
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
52
0.06
1.9
65
41.7

Associated Gene:

Gene:
WFS1
Ensembl Gene ID:
ENSAPLG00000012849
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013387
29126234 - 29161110
34877