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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29129878_29135870_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29129878 - 29135870
Intron Length:
5993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTCCA
5'SS Class:
major
3'SS Sequence:
TTTTGTCTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTATCTAAAAAT
Flanking Amino Acid:
RMLERLVSSESKKFIALDDF
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
69.7
36.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
82.3
0.73
0.7
81.5
30.6
Minor 5ss
31.5
-2.1
2.9
38.2
39.5
Minor BPS
49.7
0.06
2
75.07
41.3

Associated Gene:

Gene:
WFS1
Ensembl Gene ID:
ENSAPLG00000012849
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013387
29126234 - 29161110
34877