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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29136759_29137562_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29136759 - 29137562
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AGTATCTAAAGT
Flanking Amino Acid:
LLRRCLADRRGITSENEQEV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
78.6
35.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
70.7
0.47
1.7
84.6
30.3
Minor 5ss
41.2
-1
3.7
63.6
48.1
Minor BPS
48.5
-0
2
67.29
43.4

Associated Gene:

Gene:
WFS1
Ensembl Gene ID:
ENSAPLG00000012849
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013387
29126234 - 29161110
34877