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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29142086_29160915_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29142086 - 29160915
Intron Length:
18830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CAAATTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTTCTCAAAT
Flanking Amino Acid:
SHSREKAEKNEAMKEEPEVL
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
62.6
0.28
1
59.5
41.4
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
65.1
0.55
1.6
81.14
40.4

Associated Gene:

Gene:
WFS1
Ensembl Gene ID:
ENSAPLG00000012849
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013387
29126234 - 29161110
34877