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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29179663_29187785_R

Intron Information:

Intron Rank:
145103
Intron Class:
major
Intron Phase:
Intron Coordinates:
29179663 - 29187785
Intron Length:
8123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
GTTTTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71.5
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
80.9
0.69
0.8
78.8
34.4
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
56.6
0.29
1.8
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025485
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037996
29178330 - 29187900
9571