About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29272018_29282875_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29272018 - 29282875
Intron Length:
10858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
TTTTTCTTTCCA
Flanking Amino Acid:
RECERDIRRLMDEIKGKDRV
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
62.2
0.3
1
59
38
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
46.8
-0.2
3.6
78.67
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005851
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033898
29258755 - 29301832
43078
ENSAPLT00000006078
29239510 - 29310577
71068