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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29283992_29286218_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29283992 - 29286218
Intron Length:
2227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATTAA
5'SS Class:
major
3'SS Sequence:
TTGCCATTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTGCCATTTACA
Flanking Amino Acid:
TLLADERNELLKRSRETESQ
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
75.3
29.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.5
0.66
0.9
72.8
36.5
Minor 5ss
39
-1.2
2.9
45.8
44.7
Minor BPS
54.9
0.15
2
70.45
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005851
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033898
29258755 - 29301832
43078
ENSAPLT00000006078
29239510 - 29310577
71068