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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29301803_29306014_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29301803 - 29306014
Intron Length:
4212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
CTCTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CAATTTATAACA
Flanking Amino Acid:
GTLDAEREARTREQLQTDLL
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
80.7
34.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
80.2
0.68
0.7
72.7
32.1
Minor 5ss
45.8
-0.4
2.8
59.1
45.4
Minor BPS
53.7
0.11
1.6
61.72
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005851
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006078
29239510 - 29310577
71068