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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29306099_29309114_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29306099 - 29309114
Intron Length:
3016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
TTCTTCCTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATCTTTTTAATC
Flanking Amino Acid:
LEKALIEKGQDSKWVEEKQL
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.7
0.69
0.7
76.5
25.7
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
70.4
0.62
1.1
71.5
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005851
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006078
29239510 - 29310577
71068