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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29309178_29310403_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29309178 - 29310403
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGATGTTGTATT
Flanking Amino Acid:
IRTNQELLEKIYRMEQEEHQ
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
74.5
0.55
0.9
66.6
40
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
43.7
-0.4
2.1
61.98
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005851
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006078
29239510 - 29310577
71068