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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29316723_29317156_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29316723 - 29317156
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
TTTTGTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTTTTGTATTT
Flanking Amino Acid:
KKLDILGDNGNLRNEEQVAI
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.2
69.9
41.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83.8
0.76
0.8
82.4
34
Minor 5ss
41.5
-0.9
3.5
56.5
47.7
Minor BPS
47.8
-0
2.2
71.36
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018584
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021351
29316651 - 29325546
8896