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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29317223_29320287_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29317223 - 29320287
Intron Length:
3065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTCA
5'SS Class:
strong_major
3'SS Sequence:
TATATTCATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCCTCTTCATA
Flanking Amino Acid:
AGTVLSLCEKWLKQIEGTEA
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
76.1
28.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.2
0.5
0.9
67.3
38.9
Minor 5ss
34.4
-1.8
2.8
41.6
45
Minor BPS
55.9
0.18
1.7
67.76
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018584
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021351
29316651 - 29325546
8896