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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29323646_29325246_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29323646 - 29325246
Intron Length:
1601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAAAA
5'SS Class:
major
3'SS Sequence:
TGGGTTGCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CTGTATGTGATT
Flanking Amino Acid:
RKQALDQAYMKIQELEATLY
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
77.3
0.68
1
81.5
27
Major PPT
61.4
0.26
1
58.4
43.1
Minor 5ss
31.5
-2.1
3.2
36.3
42
Minor BPS
44.8
-0.3
2.1
62.7
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018584
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021351
29316651 - 29325546
8896