About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29347968_29349629_F

Intron Information:

Intron Rank:
137194
Intron Class:
major
Intron Phase:
Intron Coordinates:
29347968 - 29349629
Intron Length:
1662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
CTCAATATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCATTCTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
68.3
0.41
0.9
61
38.6
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
62
0.37
1.5
67.85
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023888
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046577
29345528 - 29360903
15376
ENSAPLT00000023867
29345528 - 29360903
15376