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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29349769_29351757_F

Intron Information:

Intron Rank:
137195
Intron Class:
major
Intron Phase:
Intron Coordinates:
29349769 - 29351757
Intron Length:
1989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
ACTGAAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
AATCACTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
66.1
45
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
61
0.25
1
52.6
40.9
Minor 5ss
31.8
-2.1
3.1
36.6
41.8
Minor BPS
49.9
0.07
1.7
69.44
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023888
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046577
29345528 - 29360903
15376
ENSAPLT00000023867
29345528 - 29360903
15376