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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29352454_29352713_F

Intron Information:

Intron Rank:
137196
Intron Class:
major
Intron Phase:
Intron Coordinates:
29352454 - 29352713
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCACATTTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
GTTTCCTCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
66.9
0.38
1.1
66.5
38.1
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
56.5
0.28
2
78.72
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023888
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023867
29345528 - 29360903
15376