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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29356485_29357252_F

Intron Information:

Intron Rank:
137198
Intron Class:
major
Intron Phase:
Intron Coordinates:
29356485 - 29357252
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
TTTACTGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAC
U12 Branch Point Sequence:
TTTACTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
69.9
35.8
Major BPS
59
0.22
1
66.7
30
Major PPT
74.2
0.55
1
69.6
40.3
Minor 5ss
39.4
-1.2
2.9
49.3
46.7
Minor BPS
63.5
0.42
2
79.82
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023888
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046577
29345528 - 29360903
15376
ENSAPLT00000023867
29345528 - 29360903
15376