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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29357387_29357748_F

Intron Information:

Intron Rank:
137199
Intron Class:
major
Intron Phase:
Intron Coordinates:
29357387 - 29357748
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTATTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTGCTATTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
69.7
0.44
1
63.7
41.8
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
54.5
0.22
2
80.88
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023888
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046577
29345528 - 29360903
15376
ENSAPLT00000023867
29345528 - 29360903
15376