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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2936178_2943080_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2936178 - 2943080
Intron Length:
6903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCGGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCTCTTCAACA
Flanking Amino Acid:
YMWVLVKTLEWATKRIEKGV
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
58
47.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.5
0.69
0.8
77.2
30.1
Minor 5ss
34.3
-1.8
3.6
46.4
49
Minor BPS
71.8
0.68
1.5
79.34
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002847
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034483
2935653 - 2954272
18620