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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29434088_29446854_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29434088 - 29446854
Intron Length:
12767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCGCA
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAACAAAC
Flanking Amino Acid:
QGKKSIPHITSDRLLIKGGR
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.3
39.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
37.1
-1.5
3.3
48.7
47
Minor BPS
41.8
-0.6
2.3
62.6
42

Associated Gene:

Gene:
CRMP1
Ensembl Gene ID:
ENSAPLG00000005068
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019302
29433578 - 29478900
45323