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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29460196_29463344_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29460196 - 29463344
Intron Length:
3149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CGGTATTTATCT
Flanking Amino Acid:
HAENGDLIAQEQKRILEMGI
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.7
0.78
0.9
76.9
42.1
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
49.5
0.04
1.8
65.17
45.4

Associated Gene:

Gene:
CRMP1
Ensembl Gene ID:
ENSAPLG00000005068
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005333
29431322 - 29478900
47579
ENSAPLT00000019302
29433578 - 29478900
45323