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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29474166_29476918_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29474166 - 29476918
Intron Length:
2753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
GCTCTTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTGATTTTATT
Flanking Amino Acid:
LYQRVKIRNKVGGLQGVSRG
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.4
0.46
0.9
61.8
40
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
48.4
-0
1.9
67.99
43.4

Associated Gene:

Gene:
CRMP1
Ensembl Gene ID:
ENSAPLG00000005068
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019302
29433578 - 29478900
45323
ENSAPLT00000005333
29431322 - 29478900
47579