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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2947462_2947998_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2947462 - 2947998
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGCTTCTTCATA
Flanking Amino Acid:
LIKKTCAPKEGIIERDETPM
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.7
33.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.4
0.5
1
71.6
33.2
Minor 5ss
29.2
-2.4
2.8
33.9
41.6
Minor BPS
57.8
0.24
1.7
67
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002847
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002931
2947252 - 2953989
6738