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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2950176_2950958_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2950176 - 2950958
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GATTTTTTAAGC
Flanking Amino Acid:
EIKDRHLVTKRLREHVADKS
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.2
0.57
0.9
68.7
37.3
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
61.5
0.34
1.6
67.52
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002847
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034483
2935653 - 2954272
18620
ENSAPLT00000002931
2947252 - 2953989
6738