Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2951535_2951793_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2951535 - 2951793

Intron Length:

259

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAGGA

5'SS Class:

strong_major

3'SS Sequence:

TGATCCCTTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTTTTTTGATC

Flanking Amino Acid:

GGTIYPVAIKYDPQFGDAFW

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

0.9

67.8

37.5

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

76.8

0.6

0.9

69.4

36.7

Minor 5ss

35.9

-1.6

3.3

47.3

48.1

Minor BPS

74.1

0.74

80.38

27.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002847

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034483

2935653 - 2954272

18620

ENSAPLT00000002931

2947252 - 2953989

6738