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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29521651_29523382_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29521651 - 29523382
Intron Length:
1732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTTACAGTATCT
Flanking Amino Acid:
FWEQLAHFTNECIQQSKDLM
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.2
0.79
0.9
77.1
41.6
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
45
-0.3
2.4
70.95
45.3

Associated Gene:

Gene:
EVC
Ensembl Gene ID:
ENSAPLG00000004565
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004727
29486355 - 29535766
49412
ENSAPLT00000041236
29416126 - 29535766
119641
ENSAPLT00000034141
29486355 - 29539776
53422