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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29531045_29531996_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29531045 - 29531996
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGATTTTAACA
Flanking Amino Acid:
TCFPEVLTCESFDIKLCLCS
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.8
0.65
0.9
77.3
36.4
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
70.8
0.65
1.2
75.26
36.4

Associated Gene:

Gene:
EVC
Ensembl Gene ID:
ENSAPLG00000004565
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004727
29486355 - 29535766
49412
ENSAPLT00000041236
29416126 - 29535766
119641
ENSAPLT00000034141
29486355 - 29539776
53422