About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29532842_29535610_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29532842 - 29535610
Intron Length:
2769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTCCATACAG
Flanking Amino Acid:
YISEEEMVLEENESPLNSNI
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82.5
0.73
0.8
77.2
30.6
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
54.2
-0
2.1
69.83
43

Associated Gene:

Gene:
EVC
Ensembl Gene ID:
ENSAPLG00000004565
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041236
29416126 - 29535766
119641
ENSAPLT00000034141
29486355 - 29539776
53422
ENSAPLT00000004727
29486355 - 29535766
49412