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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29542589_29549167_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29542589 - 29549167
Intron Length:
6579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGGTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTAGCTCTAACA
Flanking Amino Acid:
MAALQLPLVIQA
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.7
35.4
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
79.7
0.67
0.9
75.9
38
Minor 5ss
47.1
-0.3
2.6
65.5
45.8
Minor BPS
60
0.31
1.8
72.79
39.1

Associated Gene:

Gene:
EVC2
Ensembl Gene ID:
ENSAPLG00000004238
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034316
29542582 - 29608420
65839
ENSAPLT00000004359
29542582 - 29608420
65839