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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29549895_29554211_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29549895 - 29554211
Intron Length:
4317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATATTTCTATTT
Flanking Amino Acid:
FGITLQKCAVVDVEHDPQTA
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
90.8
0.92
0.7
89
26.5
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
47.7
-0
1.8
67.16
38.1

Associated Gene:

Gene:
EVC2
Ensembl Gene ID:
ENSAPLG00000004238
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034316
29542582 - 29608420
65839
ENSAPLT00000004359
29542582 - 29608420
65839