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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29559741_29562005_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29559741 - 29562005
Intron Length:
2265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGAAGCTTAATT
Flanking Amino Acid:
LKWNFHSKNQEIQHELSQNH
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
77.8
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.2
0.86
0.6
88.1
21.7
Minor 5ss
30.5
-2.2
2.9
41.4
45
Minor BPS
59.7
0.38
1.8
74.55
42.1

Associated Gene:

Gene:
EVC2
Ensembl Gene ID:
ENSAPLG00000004238
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034316
29542582 - 29608420
65839
ENSAPLT00000004359
29542582 - 29608420
65839