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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29576659_29576745_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29576659 - 29576745
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
CTTTTTTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AGCTCCATAACA
Flanking Amino Acid:
EQDHLKRFLLITNATLKGEL
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
55.6
43.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.5
0.75
0.8
80
31
Minor 5ss
29.6
-2.3
3.3
34.7
42.8
Minor BPS
65.4
0.48
1.6
71.87
39.7

Associated Gene:

Gene:
EVC2
Ensembl Gene ID:
ENSAPLG00000004238
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034316
29542582 - 29608420
65839