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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29583321_29585801_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29583321 - 29585801
Intron Length:
2481

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
KIRSWEQSVFMHLLSLPLSL
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1.2
91.6
21.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
32.4
-2
4
50.4
39.3
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
EVC2
Ensembl Gene ID:
ENSAPLG00000004238
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034316
29542582 - 29608420
65839
ENSAPLT00000004359
29542582 - 29608420
65839