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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29597436_29598805_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29597436 - 29598805
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTGTCTTTCACT
Flanking Amino Acid:
CNQFISLHQQSLRDEQWNCM
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
84.7
0.78
0.7
82.3
28
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
64.9
0.55
1.8
79.01
43.8

Associated Gene:

Gene:
EVC2
Ensembl Gene ID:
ENSAPLG00000004238
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034316
29542582 - 29608420
65839
ENSAPLT00000004359
29542582 - 29608420
65839