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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29605203_29606417_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29605203 - 29606417
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGAAAT
U12 Branch Point Sequence:
GTTGCTGGAAAT
Flanking Amino Acid:
AADEPGNCKKRKNQERWQAL
Intron Amino Acid Position:
1093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
52
0.05
1.3
59
44.6
Major PPT
86.8
0.83
0.7
84.7
23.1
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
44.7
-0.3
2.2
66.62
43.9

Associated Gene:

Gene:
EVC2
Ensembl Gene ID:
ENSAPLG00000004238
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034316
29542582 - 29608420
65839
ENSAPLT00000004359
29542582 - 29608420
65839